J4_4V78_006

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V78|1|BA|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V78_006 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.2826

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V78|1|BA|C|268
4V78|1|BA|C|269
*
4V78|1|BA|G|370
4V78|1|BA|A|371
4V78|1|BA|G|372
4V78|1|BA|U|373
4V78|1|BA|A|374
4V78|1|BA|G|375
*
4V78|1|BA|U|399
4V78|1|BA|G|400
4V78|1|BA|A|401
4V78|1|BA|A|402
4V78|1|BA|U|403
4V78|1|BA|A|404
4V78|1|BA|U|405
4V78|1|BA|G|406
*
4V78|1|BA|C|421
4V78|1|BA|A|422
4V78|1|BA|A|423
4V78|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28