J4_4V78_013

3D structure

PDB id

4V78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V78_013 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.2398

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V78|1|BA|A|1772
4V78|1|BA|A|1773
4V78|1|BA|C|1774
4V78|1|BA|U|1775
4V78|1|BA|G|1776
*
4V78|1|BA|C|1788
4V78|1|BA|A|1789
4V78|1|BA|C|1790
4V78|1|BA|A|1791
4V78|1|BA|G|1792
*
4V78|1|BA|U|1827
4V78|1|BA|G|1828
4V78|1|BA|A|1829
4V78|1|BA|C|1830
*
4V78|1|BA|G|1975
4V78|1|BA|U|1976
4V78|1|BA|A|1977
4V78|1|BA|A|1978
4V78|1|BA|U|1979

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2