3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
4V79|1|AA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V79_003 not in the Motif Atlas
Homologous match to J4_6CZR_027
Geometric discrepancy: 0.4085
The information below is about J4_6CZR_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.2
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

4V79|1|AA|G|115
4V79|1|AA|A|116
4V79|1|AA|G|117
4V79|1|AA|U|118
4V79|1|AA|A|119
4V79|1|AA|A|120
4V79|1|AA|U|121
4V79|1|AA|G|122
*
4V79|1|AA|U|239
4V79|1|AA|G|240
*
4V79|1|AA|C|286
4V79|1|AA|U|287
4V79|1|AA|A|288
4V79|1|AA|G|289
*
4V79|1|AA|C|311
4V79|1|AA|C|312

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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