3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V79_007 not in the Motif Atlas
Homologous match to J4_7A0S_002
Geometric discrepancy: 0.2612
The information below is about J4_7A0S_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

4V79|1|BA|G|297
4V79|1|BA|G|298
4V79|1|BA|A|299
4V79|1|BA|A|300
4V79|1|BA|G|301
*
4V79|1|BA|C|316
4V79|1|BA|G|317
4V79|1|BA|C|318
4V79|1|BA|G|319
*
4V79|1|BA|C|323
4V79|1|BA|A|324
4V79|1|BA|G|325
*
4V79|1|BA|C|337
4V79|1|BA|G|338
4V79|1|BA|U|339
4V79|1|BA|A|340
4V79|1|BA|C|341

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BE
50S ribosomal protein L4
Chain BU
50S ribosomal protein L24

Coloring options:


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