J4_4V7B_002
3D structure
- PDB id
- 4V7B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 4V7B|1|AA|C|183, 4V7B|1|AA|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7B_002 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1333
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V7B|1|AA|G|142
4V7B|1|AA|A|143
4V7B|1|AA|G|144
*
4V7B|1|AA|C|178
4V7B|1|AA|A|179
4V7B|1|AA|U|180
4V7B|1|AA|A|181
4V7B|1|AA|A|182
4V7B|1|AA|C|183
4V7B|1|AA|G|184
*
4V7B|1|AA|C|193
4V7B|1|AA|C|194
4V7B|1|AA|A|195
4V7B|1|AA|A|196
4V7B|1|AA|A|197
4V7B|1|AA|G|198
*
4V7B|1|AA|U|219
4V7B|1|AA|G|220
4V7B|1|AA|C|221
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AT
- 30S ribosomal protein S20
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