3D structure

PDB id
4V7B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Visualization of two tRNAs trapped in transit during EF-G-mediated translocation
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
4V7B|1|BA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V7B_006 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.0918
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4V7B|1|BA|C|268
4V7B|1|BA|C|269
*
4V7B|1|BA|G|370
4V7B|1|BA|A|371
4V7B|1|BA|G|372
4V7B|1|BA|U|373
4V7B|1|BA|A|374
4V7B|1|BA|G|375
*
4V7B|1|BA|U|399
4V7B|1|BA|G|400
4V7B|1|BA|A|401
4V7B|1|BA|A|402
4V7B|1|BA|U|403
4V7B|1|BA|A|404
4V7B|1|BA|U|405
4V7B|1|BA|G|406
*
4V7B|1|BA|C|421
4V7B|1|BA|A|422
4V7B|1|BA|A|423
4V7B|1|BA|G|424

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BH
50S ribosomal protein L9
Chain BX
50S ribosomal protein L28

Coloring options:


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