J4_4V7C_016

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V7C|1|AA|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7C_016 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2223

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V7C|1|AA|G|115
4V7C|1|AA|A|116
4V7C|1|AA|G|117
4V7C|1|AA|U|118
4V7C|1|AA|A|119
4V7C|1|AA|A|120
4V7C|1|AA|U|121
4V7C|1|AA|G|122
*
4V7C|1|AA|U|239
4V7C|1|AA|G|240
*
4V7C|1|AA|C|286
4V7C|1|AA|U|287
4V7C|1|AA|A|288
4V7C|1|AA|G|289
*
4V7C|1|AA|C|311
4V7C|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17