J4_4V7E_001
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CC*GAGUCG*CAAAUCG*CAAG
- Length
- 19 nucleotides
- Bulged bases
- 4V7E|1|Aa|C|296
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7E_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1901
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V7E|1|Aa|C|111
4V7E|1|Aa|C|112
*
4V7E|1|Aa|G|265
4V7E|1|Aa|A|266
4V7E|1|Aa|G|267
4V7E|1|Aa|U|268
4V7E|1|Aa|C|269
4V7E|1|Aa|G|270
*
4V7E|1|Aa|C|291
4V7E|1|Aa|A|292
4V7E|1|Aa|A|293
4V7E|1|Aa|A|294
4V7E|1|Aa|U|295
4V7E|1|Aa|C|296
4V7E|1|Aa|G|297
*
4V7E|1|Aa|C|314
4V7E|1|Aa|A|315
4V7E|1|Aa|A|316
4V7E|1|Aa|G|317
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein L13E
- Chain CN
- 60S ribosomal protein L15E
- Chain Ch
- 60S ribosomal protein L29
- Chain Ci
- 60S ribosomal protein L36E
Coloring options: