J4_4V7E_002
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CCAAG*CGCC*GAG*CGUCCG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7E_002 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.1233
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_43318.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Aa|C|183
4V7E|1|Aa|C|184
4V7E|1|Aa|A|185
4V7E|1|Aa|A|186
4V7E|1|Aa|G|187
*
4V7E|1|Aa|C|203
4V7E|1|Aa|G|204
4V7E|1|Aa|C|205
4V7E|1|Aa|C|206
*
4V7E|1|Aa|G|210
4V7E|1|Aa|A|211
4V7E|1|Aa|G|212
*
4V7E|1|Aa|C|224
4V7E|1|Aa|G|225
4V7E|1|Aa|U|226
4V7E|1|Aa|C|227
4V7E|1|Aa|C|228
4V7E|1|Aa|G|229
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- 60S ribosomal protein L4
- Chain CY
- 60S ribosomal protein L24
- Chain Cj
- 60S ribosomal protein L37E
Coloring options: