J4_4V7E_005
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GGUUC*GGUAAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|1526
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7E_005 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1454
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V7E|1|Aa|G|1495
4V7E|1|Aa|G|1496
4V7E|1|Aa|U|1497
4V7E|1|Aa|U|1498
4V7E|1|Aa|C|1499
*
4V7E|1|Aa|G|1523
4V7E|1|Aa|G|1524
4V7E|1|Aa|U|1525
4V7E|1|Aa|A|1526
4V7E|1|Aa|A|1527
4V7E|1|Aa|G|1528
*
4V7E|1|Aa|C|1612
4V7E|1|Aa|C|1613
*
4V7E|1|Aa|G|1825
4V7E|1|Aa|G|1826
4V7E|1|Aa|U|1827
4V7E|1|Aa|C|1828
4V7E|1|Aa|G|1829
4V7E|1|Aa|U|1830
4V7E|1|Aa|A|1831
4V7E|1|Aa|C|1832
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CR
- 60S ribosomal protein L19E
- Chain CX
- 60S ribosomal protein L23
- Chain Cg
- 60S ribosomal protein L34E
- Chain Ch
- 60S ribosomal protein L29
- Chain Cj
- 60S ribosomal protein L37E
- Chain Ck
- 60S ribosomal protein L38E
- Chain Cl
- 60S ribosomal protein L39E
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