J4_4V7E_008
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGGAUUAAC
- Length
- 25 nucleotides
- Bulged bases
- 4V7E|1|Aa|G|2314, 4V7E|1|Aa|G|2315, 4V7E|1|Aa|U|2317
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7E_008 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.4874
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V7E|1|Aa|G|2124
4V7E|1|Aa|A|2125
4V7E|1|Aa|C|2126
4V7E|1|Aa|U|2127
4V7E|1|Aa|G|2128
*
4V7E|1|Aa|C|2140
4V7E|1|Aa|A|2141
4V7E|1|Aa|A|2142
4V7E|1|Aa|A|2143
4V7E|1|Aa|G|2144
*
4V7E|1|Aa|U|2181
4V7E|1|Aa|G|2182
4V7E|1|Aa|A|2183
4V7E|1|Aa|U|2184
4V7E|1|Aa|U|2185
*
4V7E|1|Aa|A|2312
4V7E|1|Aa|U|2313
4V7E|1|Aa|G|2314
4V7E|1|Aa|G|2315
4V7E|1|Aa|A|2316
4V7E|1|Aa|U|2317
4V7E|1|Aa|U|2318
4V7E|1|Aa|A|2319
4V7E|1|Aa|A|2320
4V7E|1|Aa|C|2321
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ad
- Small subunit ribosomal RNA; SSU rRNA
- Chain CA
- 60S ribosomal protein L2
- Chain Cn
- 60S ribosomal protein L41E
- Chain Cp
- 60S ribosomal protein L43E
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