J4_4V7E_013

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACGAUG*UU

Length

23 nucleotides

Bulged bases

4V7E|1|Ad|A|627, 4V7E|1|Ad|A|1031

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7E_013 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.185

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4V7E|1|Ad|A|626
4V7E|1|Ad|A|627
4V7E|1|Ad|G|628
*
4V7E|1|Ad|C|980
4V7E|1|Ad|G|981
4V7E|1|Ad|A|982
4V7E|1|Ad|A|983
4V7E|1|Ad|A|984
4V7E|1|Ad|G|985
*
4V7E|1|Ad|C|1026
4V7E|1|Ad|C|1027
4V7E|1|Ad|A|1028
4V7E|1|Ad|U|1029
4V7E|1|Ad|A|1030
4V7E|1|Ad|A|1031
4V7E|1|Ad|A|1032
4V7E|1|Ad|C|1033
4V7E|1|Ad|G|1034
4V7E|1|Ad|A|1035
4V7E|1|Ad|U|1036
4V7E|1|Ad|G|1037
*
4V7E|1|Ad|U|1108
4V7E|1|Ad|U|1109

Current chains

Chain Ad

18S ribosomal RNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain BL

40S ribosomal protein S17

Chain BN

40S ribosomal protein S15

Chain BW

40S ribosomal protein S8

Chain BX

40S ribosomal protein S12

Chain Ba

40S ribosomal protein S26E

Chain Cn

60S ribosomal protein L41E

Chain Cp

60S ribosomal protein L43E