J4_4V7E_014
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AUAG*UGG*CAGAUC*GU
- Length
- 15 nucleotides
- Bulged bases
- 4V7E|1|Ae|U|8, 4V7E|1|Ae|A|46, 4V7E|1|Ae|U|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V7E_014 not in the Motif Atlas
- Homologous match to J4_1QTQ_001
- Geometric discrepancy: 0.3175
- The information below is about J4_1QTQ_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.3
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V7E|1|Ae|A|7
4V7E|1|Ae|U|8
4V7E|1|Ae|A|9
4V7E|1|Ae|G|10
*
4V7E|1|Ae|U|25
4V7E|1|Ae|G|26
4V7E|1|Ae|G|27
*
4V7E|1|Ae|C|43
4V7E|1|Ae|A|44
4V7E|1|Ae|G|45
4V7E|1|Ae|A|46
4V7E|1|Ae|U|47
4V7E|1|Ae|C|48
*
4V7E|1|Ae|G|64
4V7E|1|Ae|U|65
Current chains
- Chain Ae
- P-site tRNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ad
- Small subunit ribosomal RNA; SSU rRNA
- Chain BS
- 40S ribosomal protein S13
- Chain BZ
- 40S ribosomal protein S25E
- Chain CI
- 60S ribosomal protein L16
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