J4_4V7I_001

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V7I|1|A8|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7I_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2943

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V7I|1|A8|C|268
4V7I|1|A8|C|269
*
4V7I|1|A8|G|370
4V7I|1|A8|A|371
4V7I|1|A8|G|372
4V7I|1|A8|U|373
4V7I|1|A8|A|374
4V7I|1|A8|G|375
*
4V7I|1|A8|U|399
4V7I|1|A8|G|400
4V7I|1|A8|A|401
4V7I|1|A8|A|402
4V7I|1|A8|U|403
4V7I|1|A8|A|404
4V7I|1|A8|U|405
4V7I|1|A8|G|406
*
4V7I|1|A8|C|421
4V7I|1|A8|A|422
4V7I|1|A8|A|423
4V7I|1|A8|G|424

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L28