J4_4V7I_006

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V7I|1|A8|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7I_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.2044

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V7I|1|A8|U|1313
4V7I|1|A8|C|1314
*
4V7I|1|A8|G|1338
4V7I|1|A8|G|1339
4V7I|1|A8|U|1340
4V7I|1|A8|G|1341
4V7I|1|A8|A|1342
4V7I|1|A8|G|1343
*
4V7I|1|A8|C|1404
4V7I|1|A8|U|1405
*
4V7I|1|A8|A|1597
4V7I|1|A8|A|1598
4V7I|1|A8|U|1599
4V7I|1|A8|C|1600
4V7I|1|A8|G|1601
4V7I|1|A8|U|1602
4V7I|1|A8|A|1603

Current chains

Chain A8

23S ribosomal RNA

Nearby chains

Chain AA

PREPROTEIN TRANSLOCASE SECY SUBUNIT

Chain AT

50S ribosomal protein L23