J4_4V7I_012

3D structure

PDB id

4V7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome-SecY complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V7I|1|BA|U|118, 4V7I|1|BA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7I_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.5021

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V7I|1|BA|G|115
4V7I|1|BA|A|116
4V7I|1|BA|G|117
4V7I|1|BA|U|118
4V7I|1|BA|A|119
4V7I|1|BA|A|120
4V7I|1|BA|U|121
4V7I|1|BA|G|122
*
4V7I|1|BA|U|239
4V7I|1|BA|G|240
*
4V7I|1|BA|C|286
4V7I|1|BA|U|287
4V7I|1|BA|A|288
4V7I|1|BA|G|289
*
4V7I|1|BA|C|311
4V7I|1|BA|C|312

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BQ

30S ribosomal protein S17