3D structure

PDB id
4V7I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome-SecY complex.
Experimental method
ELECTRON MICROSCOPY
Resolution
9.6 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
4V7I|1|BA|C|183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V7I_013 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.2598
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

4V7I|1|BA|G|142
4V7I|1|BA|A|143
4V7I|1|BA|G|144
*
4V7I|1|BA|C|178
4V7I|1|BA|A|179
4V7I|1|BA|U|180
4V7I|1|BA|A|181
4V7I|1|BA|A|182
4V7I|1|BA|C|183
4V7I|1|BA|G|184
*
4V7I|1|BA|C|193
4V7I|1|BA|C|194
4V7I|1|BA|A|195
4V7I|1|BA|A|196
4V7I|1|BA|A|197
4V7I|1|BA|G|198
*
4V7I|1|BA|U|219
4V7I|1|BA|G|220
4V7I|1|BA|C|221

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BT
30S ribosomal protein S20

Coloring options:


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