J4_4V7K_029

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V7K|1|Ba|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7K_029 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0918

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V7K|1|Ba|G|142
4V7K|1|Ba|A|143
4V7K|1|Ba|G|144
*
4V7K|1|Ba|C|178
4V7K|1|Ba|A|179
4V7K|1|Ba|U|180
4V7K|1|Ba|G|181
4V7K|1|Ba|U|182
4V7K|1|Ba|G|183
*
4V7K|1|Ba|C|194
4V7K|1|Ba|A|195
4V7K|1|Ba|A|196
4V7K|1|Ba|A|197
4V7K|1|Ba|G|198
*
4V7K|1|Ba|C|219
4V7K|1|Ba|G|220
4V7K|1|Ba|C|221

Current chains

Chain Ba

RNA (1504-MER)

Nearby chains

Chain Bp

30S ribosomal protein S16

Chain Bt

30S ribosomal protein S20