J4_4V7R_007

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UC*GGUUAG*CC*GGUCGUA

Length

17 nucleotides

Bulged bases

4V7R|1|B1|U|1523, 4V7R|1|B1|A|1524, 4V7R|1|B1|G|1833, 4V7R|1|B1|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7R|1|B1|U|1495
4V7R|1|B1|C|1496
*
4V7R|1|B1|G|1520
4V7R|1|B1|G|1521
4V7R|1|B1|U|1522
4V7R|1|B1|U|1523
4V7R|1|B1|A|1524
4V7R|1|B1|G|1525
*
4V7R|1|B1|C|1614
4V7R|1|B1|C|1615
*
4V7R|1|B1|G|1829
4V7R|1|B1|G|1830
4V7R|1|B1|U|1831
4V7R|1|B1|C|1832
4V7R|1|B1|G|1833
4V7R|1|B1|U|1834
4V7R|1|B1|A|1835

Current chains

Chain B1

25S ribosomal RNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain BW

60S ribosomal protein L25

Chain Be

60S ribosomal protein L39