3D structure

PDB id
4V7R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
4 Å

Loop

Sequence
UC*GAGUCG*CUAAGUG*UAAA
Length
19 nucleotides
Bulged bases
4V7R|1|D1|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V7R_015 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.2414
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4V7R|1|D1|U|112
4V7R|1|D1|C|113
*
4V7R|1|D1|G|267
4V7R|1|D1|A|268
4V7R|1|D1|G|269
4V7R|1|D1|U|270
4V7R|1|D1|C|271
4V7R|1|D1|G|272
*
4V7R|1|D1|C|293
4V7R|1|D1|U|294
4V7R|1|D1|A|295
4V7R|1|D1|A|296
4V7R|1|D1|G|297
4V7R|1|D1|U|298
4V7R|1|D1|G|299
*
4V7R|1|D1|U|316
4V7R|1|D1|A|317
4V7R|1|D1|A|318
4V7R|1|D1|A|319

Current chains

Chain D1
25S ribosomal RNA

Nearby chains

Chain DH
60S ribosomal protein L8-A
Chain DO
60S ribosomal protein L15-A

Coloring options:


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