J4_4V83_002

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V83|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V83_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.117

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V83|1|AA|G|142
4V83|1|AA|A|143
4V83|1|AA|G|144
*
4V83|1|AA|C|178
4V83|1|AA|A|179
4V83|1|AA|U|180
4V83|1|AA|G|181
4V83|1|AA|U|182
4V83|1|AA|G|183
*
4V83|1|AA|C|194
4V83|1|AA|A|195
4V83|1|AA|A|196
4V83|1|AA|A|197
4V83|1|AA|G|198
*
4V83|1|AA|C|219
4V83|1|AA|G|220
4V83|1|AA|C|221

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AT

30S ribosomal protein S20