J4_4V83_011

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V83_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0622

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V83|1|BA|G|1772
4V83|1|BA|A|1773
4V83|1|BA|C|1774
4V83|1|BA|U|1775
4V83|1|BA|G|1776
*
4V83|1|BA|C|1788
4V83|1|BA|A|1789
4V83|1|BA|C|1790
4V83|1|BA|A|1791
4V83|1|BA|G|1792
*
4V83|1|BA|C|1827
4V83|1|BA|G|1828
4V83|1|BA|A|1829
4V83|1|BA|C|1830
*
4V83|1|BA|G|1975
4V83|1|BA|U|1976
4V83|1|BA|A|1977
4V83|1|BA|A|1978
4V83|1|BA|C|1979

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2