J4_4V87_016

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V87_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1182

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V87|1|CA|G|142
4V87|1|CA|A|143
4V87|1|CA|G|144
*
4V87|1|CA|C|178
4V87|1|CA|A|179
4V87|1|CA|U|180
4V87|1|CA|G|181
4V87|1|CA|U|182
4V87|1|CA|G|183
*
4V87|1|CA|C|194
4V87|1|CA|A|195
4V87|1|CA|A|196
4V87|1|CA|A|197
4V87|1|CA|G|198
*
4V87|1|CA|C|219
4V87|1|CA|G|220
4V87|1|CA|C|221

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20