3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UC*GAGUCG*CUAAGUG*UAAA
Length
19 nucleotides
Bulged bases
4V88|1|A1|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V88_001 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.098
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_94698.1
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
Number of instances in this motif group
10

Unit IDs

4V88|1|A1|U|112
4V88|1|A1|C|113
*
4V88|1|A1|G|267
4V88|1|A1|A|268
4V88|1|A1|G|269
4V88|1|A1|U|270
4V88|1|A1|C|271
4V88|1|A1|G|272
*
4V88|1|A1|C|293
4V88|1|A1|U|294
4V88|1|A1|A|295
4V88|1|A1|A|296
4V88|1|A1|G|297
4V88|1|A1|U|298
4V88|1|A1|G|299
*
4V88|1|A1|U|316
4V88|1|A1|A|317
4V88|1|A1|A|318
4V88|1|A1|A|319

Current chains

Chain A1
25S rRNA

Nearby chains

Chain BL
60S ribosomal protein L13-A
Chain BN
60S ribosomal protein L15-A
Chain Bh
60S ribosomal protein L35-A
Chain Bi
60S ribosomal protein L36-A

Coloring options:


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