J4_4V88_008
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 4V88|1|A1|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V88_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.0491
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A1|C|2654
4V88|1|A1|U|2655
4V88|1|A1|A|2656
4V88|1|A1|A|2657
4V88|1|A1|G|2658
*
4V88|1|A1|U|2712
4V88|1|A1|U|2713
4V88|1|A1|G|2714
4V88|1|A1|A|2715
4V88|1|A1|U|2716
*
4V88|1|A1|A|2740
4V88|1|A1|C|2741
4V88|1|A1|C|2742
*
4V88|1|A1|G|2751
4V88|1|A1|U|2752
4V88|1|A1|G|2753
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain Ah
- Suppressor protein STM1
- Chain BD
- 60S ribosomal protein L5
- Chain BT
- 60S ribosomal protein L21-A
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- 60S ribosomal protein L42-A
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