J4_4V88_012
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 4V88|1|A5|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V88_012 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0644
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A5|U|112
4V88|1|A5|C|113
*
4V88|1|A5|G|267
4V88|1|A5|A|268
4V88|1|A5|G|269
4V88|1|A5|U|270
4V88|1|A5|C|271
4V88|1|A5|G|272
*
4V88|1|A5|C|293
4V88|1|A5|U|294
4V88|1|A5|A|295
4V88|1|A5|A|296
4V88|1|A5|G|297
4V88|1|A5|U|298
4V88|1|A5|G|299
*
4V88|1|A5|U|316
4V88|1|A5|A|317
4V88|1|A5|A|318
4V88|1|A5|A|319
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain DL
- 60S ribosomal protein L13-A
- Chain DN
- 60S ribosomal protein L15-A
- Chain Dh
- 60S ribosomal protein L35-A
- Chain Di
- 60S ribosomal protein L36-A
Coloring options: