3D structure

PDB id
4V88 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the eukaryotic ribosome at 3.0 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UAA*UC*GCU*AUG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V88_022 not in the Motif Atlas
Homologous match to J4_8P9A_020
Geometric discrepancy: 0.0488
The information below is about J4_8P9A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_65356.1
Basepair signature
cWW-tSS-cWW-cWW-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V88|1|A5|U|3010
4V88|1|A5|A|3011
4V88|1|A5|A|3012
*
4V88|1|A5|U|3042
4V88|1|A5|C|3043
*
4V88|1|A5|G|3098
4V88|1|A5|C|3099
4V88|1|A5|U|3100
*
4V88|1|A5|A|3134
4V88|1|A5|U|3135
4V88|1|A5|G|3136

Current chains

Chain A5
25S rRNA

Nearby chains

Chain DB
60S ribosomal protein L3
Chain DO
60S ribosomal protein L16-A, 60S ribosomal protein L16-B
Chain DV
60S ribosomal protein L23-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 2.4157 s
Application loaded.