Motif J4_37757.1 Version J4_37757.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 1-11 | 2-5 | 3-4 | 5-6 | 7-10 | 8-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8P9A_020 | 8P9A | 0.0782 | 0 | AR | LSU rRNA | U | 3010 | A | 3011 | A | 3012 | * | U | 3042 | C | 3043 | * | G | 3098 | C | 3099 | U | 3100 | * | A | 3134 | U | 3135 | G | 3136 | cWW | tSs | cWW | cWW | cWW | cWW |
| 2 | J4_8OI5_009 | 8OI5 | 0.0000 | 0 | 1 | LSU rRNA | U | 2982 | A | 2983 | A | 2984 | * | U | 3014 | C | 3015 | * | G | 3070 | C | 3071 | U | 3072 | * | A | 3106 | U | 3107 | G | 3108 | cWW | tSs | cWW | cWW | cWW | cWW |
| 3 | J4_9AXU_010 | 9AXU | 0.1832 | 0 | 2 | LSU rRNA | U | 3106 | A | 3107 | A | 3108 | * | U | 3138 | C | 3139 | * | G | 3194 | C | 3195 | C | 3196 | * | G | 3230 | U | 3231 | G | 3232 | cWW | tSs | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAA*UC*GCU*AUG | 2 |
| UAA*UC*GCC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A**C*U | 3 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.10 | Max 0.19
Coloring options: