J4_4V8A_027
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- 4V8A|1|DA|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8A_027 not in the Motif Atlas
- Homologous match to J4_4LFB_002
- Geometric discrepancy: 0.0862
- The information below is about J4_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_88771.1
- Basepair signature
- cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V8A|1|DA|G|142
4V8A|1|DA|A|143
4V8A|1|DA|G|144
*
4V8A|1|DA|C|178
4V8A|1|DA|A|179
4V8A|1|DA|U|180
4V8A|1|DA|G|181
4V8A|1|DA|U|182
4V8A|1|DA|G|183
*
4V8A|1|DA|C|194
4V8A|1|DA|A|195
4V8A|1|DA|A|196
4V8A|1|DA|A|197
4V8A|1|DA|G|198
*
4V8A|1|DA|C|219
4V8A|1|DA|G|220
4V8A|1|DA|C|221
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DT
- 30S ribosomal protein S20
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