J4_4V8E_005

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4V8E|1|AA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_005 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0799

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V8E|1|AA|U|1313
4V8E|1|AA|C|1314
*
4V8E|1|AA|G|1338
4V8E|1|AA|G|1339
4V8E|1|AA|U|1340
4V8E|1|AA|U|1341
4V8E|1|AA|A|1342
4V8E|1|AA|G|1343
*
4V8E|1|AA|C|1404
4V8E|1|AA|U|1405
*
4V8E|1|AA|A|1597
4V8E|1|AA|C|1598
4V8E|1|AA|C|1599
4V8E|1|AA|C|1600
4V8E|1|AA|G|1601
4V8E|1|AA|U|1602
4V8E|1|AA|A|1603

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AT

50S ribosomal protein L23