J4_4V8E_015

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V8E|1|CA|U|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_015 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1172

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8E|1|CA|C|258
4V8E|1|CA|U|259
*
4V8E|1|CA|G|398
4V8E|1|CA|A|399
4V8E|1|CA|G|400
4V8E|1|CA|U|401
4V8E|1|CA|A|402
4V8E|1|CA|C|403
*
4V8E|1|CA|G|427
4V8E|1|CA|G|428
4V8E|1|CA|A|429
4V8E|1|CA|A|430
4V8E|1|CA|U|431
4V8E|1|CA|C|432
4V8E|1|CA|U|433
4V8E|1|CA|G|434
*
4V8E|1|CA|U|449
4V8E|1|CA|A|450
4V8E|1|CA|A|451
4V8E|1|CA|G|452

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CK

50S ribosomal protein L9

Chain CZ

50S ribosomal protein L28