J4_4V8E_018

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4V8E|1|CA|U|1388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_018 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.1456

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V8E|1|CA|G|1357
4V8E|1|CA|G|1358
4V8E|1|CA|U|1359
4V8E|1|CA|U|1360
4V8E|1|CA|C|1361
*
4V8E|1|CA|G|1385
4V8E|1|CA|G|1386
4V8E|1|CA|U|1387
4V8E|1|CA|U|1388
4V8E|1|CA|A|1389
4V8E|1|CA|G|1390
*
4V8E|1|CA|C|1451
4V8E|1|CA|U|1452
*
4V8E|1|CA|A|1644
4V8E|1|CA|C|1645
4V8E|1|CA|C|1646
4V8E|1|CA|C|1647
4V8E|1|CA|G|1648
4V8E|1|CA|U|1649
4V8E|1|CA|A|1650
4V8E|1|CA|C|1651

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CT

50S ribosomal protein L23