J4_4V8E_024

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGC*GAC*GGAAG*CGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8E_024 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.0982

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V8E|1|CA|G|2656
4V8E|1|CA|G|2657
4V8E|1|CA|G|2658
4V8E|1|CA|C|2659
*
4V8E|1|CA|G|2687
4V8E|1|CA|A|2688
4V8E|1|CA|C|2689
*
4V8E|1|CA|G|2745
4V8E|1|CA|G|2746
4V8E|1|CA|A|2747
4V8E|1|CA|A|2748
4V8E|1|CA|G|2749
*
4V8E|1|CA|C|2783
4V8E|1|CA|G|2784
4V8E|1|CA|C|2785

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CM

50S ribosomal protein L13

Chain CN

50S ribosomal protein L14