J4_4V8F_017

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V8F|1|CA|U|182, 4V8F|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8F_017 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1569

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V8F|1|CA|G|142
4V8F|1|CA|A|143
4V8F|1|CA|G|144
*
4V8F|1|CA|C|178
4V8F|1|CA|A|179
4V8F|1|CA|U|180
4V8F|1|CA|G|181
4V8F|1|CA|U|182
4V8F|1|CA|G|183
*
4V8F|1|CA|C|194
4V8F|1|CA|A|195
4V8F|1|CA|A|196
4V8F|1|CA|A|197
4V8F|1|CA|G|198
*
4V8F|1|CA|C|219
4V8F|1|CA|G|220
4V8F|1|CA|C|221

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20