3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
4V8F|1|CA|U|182, 4V8F|1|CA|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V8F_017 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.1569
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

4V8F|1|CA|G|142
4V8F|1|CA|A|143
4V8F|1|CA|G|144
*
4V8F|1|CA|C|178
4V8F|1|CA|A|179
4V8F|1|CA|U|180
4V8F|1|CA|G|181
4V8F|1|CA|U|182
4V8F|1|CA|G|183
*
4V8F|1|CA|C|194
4V8F|1|CA|A|195
4V8F|1|CA|A|196
4V8F|1|CA|A|197
4V8F|1|CA|G|198
*
4V8F|1|CA|C|219
4V8F|1|CA|G|220
4V8F|1|CA|C|221

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CW
30S RIBOSOMAL PROTEIN S20

Coloring options:


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