J4_4V8F_028
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 4V8F|1|DA|A|2288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8F_028 not in the Motif Atlas
- Homologous match to J4_4WF9_008
- Geometric discrepancy: 0.1727
- The information below is about J4_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8F|1|DA|C|2285
4V8F|1|DA|A|2286
4V8F|1|DA|A|2287
4V8F|1|DA|A|2288
4V8F|1|DA|G|2289
*
4V8F|1|DA|C|2343
4V8F|1|DA|U|2344
4V8F|1|DA|G|2345
4V8F|1|DA|A|2346
4V8F|1|DA|C|2347
*
4V8F|1|DA|G|2370
4V8F|1|DA|G|2371
4V8F|1|DA|G|2372
*
4V8F|1|DA|C|2381
4V8F|1|DA|G|2382
4V8F|1|DA|G|2383
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain D3
- 50S ribosomal protein L27
- Chain D6
- 50S ribosomal protein L33
- Chain D8
- 50S ribosomal protein L35
- Chain DG
- 50S ribosomal protein L5
- Chain DQ
- 50S ribosomal protein L18
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