3D structure

PDB id
4V8G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of RMF bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
4V8G|1|AA|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V8G_027 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.1175
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

4V8G|1|AA|G|142
4V8G|1|AA|A|143
4V8G|1|AA|G|144
*
4V8G|1|AA|C|178
4V8G|1|AA|A|179
4V8G|1|AA|U|180
4V8G|1|AA|G|181
4V8G|1|AA|U|182
4V8G|1|AA|G|183
*
4V8G|1|AA|C|194
4V8G|1|AA|A|195
4V8G|1|AA|A|196
4V8G|1|AA|A|197
4V8G|1|AA|G|198
*
4V8G|1|AA|C|219
4V8G|1|AA|G|220
4V8G|1|AA|C|221

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AT
30S Ribosomal Protein S20

Coloring options:


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