J4_4V8J_001

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

4V8J|1|AA|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8J_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.087

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V8J|1|AA|G|108
4V8J|1|AA|A|109
4V8J|1|AA|G|110
4V8J|1|AA|U|111
4V8J|1|AA|A|112
4V8J|1|AA|A|113
4V8J|1|AA|C|114
4V8J|1|AA|G|115
*
4V8J|1|AA|U|234
4V8J|1|AA|C|235
*
4V8J|1|AA|G|281
4V8J|1|AA|U|282
4V8J|1|AA|A|283
4V8J|1|AA|G|284
*
4V8J|1|AA|C|306
4V8J|1|AA|C|307

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17