J4_4V8J_006

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

4V8J|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8J_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1444

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8J|1|BA|C|268
4V8J|1|BA|U|269
*
4V8J|1|BA|G|370
4V8J|1|BA|A|371
4V8J|1|BA|G|372
4V8J|1|BA|U|373
4V8J|1|BA|A|374
4V8J|1|BA|C|375
*
4V8J|1|BA|G|399
4V8J|1|BA|G|400
4V8J|1|BA|A|401
4V8J|1|BA|A|402
4V8J|1|BA|U|403
4V8J|1|BA|C|404
4V8J|1|BA|U|405
4V8J|1|BA|G|406
*
4V8J|1|BA|U|421
4V8J|1|BA|A|422
4V8J|1|BA|A|423
4V8J|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9