J4_4V8O_016

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V8O|1|AA|U|182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8O_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1834

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V8O|1|AA|G|142
4V8O|1|AA|A|143
4V8O|1|AA|G|144
*
4V8O|1|AA|C|178
4V8O|1|AA|A|179
4V8O|1|AA|U|180
4V8O|1|AA|G|181
4V8O|1|AA|U|182
4V8O|1|AA|G|183
*
4V8O|1|AA|C|194
4V8O|1|AA|A|195
4V8O|1|AA|A|196
4V8O|1|AA|A|197
4V8O|1|AA|G|198
*
4V8O|1|AA|C|219
4V8O|1|AA|G|220
4V8O|1|AA|C|221

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20