J4_4V8P_006
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GG*UU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8P_006 not in the Motif Atlas
- Homologous match to J4_8C3A_005
- Geometric discrepancy: 0.1486
- The information below is about J4_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|A1|G|1698
4V8P|1|A1|G|1699
*
4V8P|1|A1|U|1717
4V8P|1|A1|U|1718
*
4V8P|1|A1|A|1777
4V8P|1|A1|G|1778
*
4V8P|1|A1|U|1798
4V8P|1|A1|C|1799
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AL
- RPL34
- Chain AM
- RIBOSOMAL PROTEIN L22
- Chain AP
- RPL38
- Chain BO
- RPL19
Coloring options: