J4_4V8P_010
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UAA*UC*GUU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8P_010 not in the Motif Atlas
- Homologous match to J4_8C3A_009
- Geometric discrepancy: 0.1745
- The information below is about J4_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|A1|U|2999
4V8P|1|A1|A|3000
4V8P|1|A1|A|3001
*
4V8P|1|A1|U|3031
4V8P|1|A1|C|3032
*
4V8P|1|A1|G|3087
4V8P|1|A1|U|3088
4V8P|1|A1|U|3089
*
4V8P|1|A1|A|3123
4V8P|1|A1|U|3124
4V8P|1|A1|G|3125
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain BB
- RIBOSOMAL PROTEIN L3
- Chain BI
- 60S RIBOSOMAL PROTEIN L13A
- Chain BJ
- RPL23
Coloring options: