J4_4V8P_021
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 4V8P|1|F1|U|297
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8P_021 not in the Motif Atlas
- Homologous match to J4_8C3A_001
- Geometric discrepancy: 0.1585
- The information below is about J4_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|F1|U|110
4V8P|1|F1|C|111
*
4V8P|1|F1|G|266
4V8P|1|F1|A|267
4V8P|1|F1|G|268
4V8P|1|F1|U|269
4V8P|1|F1|C|270
4V8P|1|F1|G|271
*
4V8P|1|F1|C|292
4V8P|1|F1|U|293
4V8P|1|F1|A|294
4V8P|1|F1|A|295
4V8P|1|F1|G|296
4V8P|1|F1|U|297
4V8P|1|F1|G|298
*
4V8P|1|F1|U|315
4V8P|1|F1|A|316
4V8P|1|F1|A|317
4V8P|1|F1|A|318
Current chains
- Chain F1
- 26S RRNA
Nearby chains
- Chain EL
- RIBOSOMAL PROTEIN L15
- Chain EU
- RPL35
- Chain FQ
- 60S RIBOSOMAL PROTEIN L36
- Chain FU
- RPL13
Coloring options: