J4_4V8P_037

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUUAAU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8P_037 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.1065

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8P|1|H1|G|2126
4V8P|1|H1|A|2127
4V8P|1|H1|C|2128
4V8P|1|H1|U|2129
4V8P|1|H1|G|2130
*
4V8P|1|H1|C|2142
4V8P|1|H1|A|2143
4V8P|1|H1|A|2144
4V8P|1|H1|A|2145
4V8P|1|H1|G|2146
*
4V8P|1|H1|U|2181
4V8P|1|H1|G|2182
4V8P|1|H1|A|2183
4V8P|1|H1|U|2184
4V8P|1|H1|U|2185
*
4V8P|1|H1|A|2312
4V8P|1|H1|U|2313
4V8P|1|H1|U|2314
4V8P|1|H1|A|2315
4V8P|1|H1|A|2316
4V8P|1|H1|U|2317

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GA

RPL8

Chain GY

RPL37A