J4_4V8Q_008

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Q_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0588

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V8Q|1|AA|G|1772
4V8Q|1|AA|A|1773
4V8Q|1|AA|C|1774
4V8Q|1|AA|U|1775
4V8Q|1|AA|G|1776
*
4V8Q|1|AA|C|1788
4V8Q|1|AA|A|1789
4V8Q|1|AA|C|1790
4V8Q|1|AA|A|1791
4V8Q|1|AA|G|1792
*
4V8Q|1|AA|C|1827
4V8Q|1|AA|G|1828
4V8Q|1|AA|A|1829
4V8Q|1|AA|C|1830
*
4V8Q|1|AA|G|1975
4V8Q|1|AA|U|1976
4V8Q|1|AA|A|1977
4V8Q|1|AA|A|1978
4V8Q|1|AA|C|1979

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2