J4_4V8Q_010

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

4V8Q|1|AA|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Q_010 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1579

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

4V8Q|1|AA|C|2285
4V8Q|1|AA|A|2286
4V8Q|1|AA|A|2287
4V8Q|1|AA|A|2288
4V8Q|1|AA|G|2289
*
4V8Q|1|AA|C|2343
4V8Q|1|AA|U|2344
4V8Q|1|AA|G|2345
4V8Q|1|AA|A|2346
4V8Q|1|AA|C|2347
*
4V8Q|1|AA|G|2370
4V8Q|1|AA|G|2371
4V8Q|1|AA|G|2372
*
4V8Q|1|AA|C|2381
4V8Q|1|AA|G|2382
4V8Q|1|AA|G|2383

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A0

50S RIBOSOMAL PROTEIN L27

Chain A6

50S RIBOSOMAL PROTEIN L33

Chain A8

50S RIBOSOMAL PROTEIN L35