J4_4V8Q_013

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V8Q|1|BA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Q_013 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1485

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V8Q|1|BA|G|142
4V8Q|1|BA|A|143
4V8Q|1|BA|G|144
*
4V8Q|1|BA|C|178
4V8Q|1|BA|A|179
4V8Q|1|BA|U|180
4V8Q|1|BA|G|181
4V8Q|1|BA|U|182
4V8Q|1|BA|G|183
*
4V8Q|1|BA|C|194
4V8Q|1|BA|A|195
4V8Q|1|BA|A|196
4V8Q|1|BA|A|197
4V8Q|1|BA|G|198
*
4V8Q|1|BA|C|219
4V8Q|1|BA|G|220
4V8Q|1|BA|C|221

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BT

30S RIBOSOMAL PROTEIN S20