J4_4V8T_002
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8T_002 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.0586
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8T|1|5|C|185
4V8T|1|5|U|186
4V8T|1|5|A|187
4V8T|1|5|U|188
4V8T|1|5|G|189
*
4V8T|1|5|C|205
4V8T|1|5|G|206
4V8T|1|5|U|207
4V8T|1|5|C|208
*
4V8T|1|5|G|212
4V8T|1|5|A|213
4V8T|1|5|G|214
*
4V8T|1|5|C|226
4V8T|1|5|G|227
4V8T|1|5|U|228
4V8T|1|5|G|229
4V8T|1|5|U|230
4V8T|1|5|G|231
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S RIBOSOMAL PROTEIN L4-A
- Chain Y
- 60S RIBOSOMAL PROTEIN L26-A
Coloring options: