J4_4V8T_011

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8T_011 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0488

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V8T|1|5|U|3010
4V8T|1|5|A|3011
4V8T|1|5|A|3012
*
4V8T|1|5|U|3042
4V8T|1|5|C|3043
*
4V8T|1|5|G|3098
4V8T|1|5|C|3099
4V8T|1|5|U|3100
*
4V8T|1|5|A|3134
4V8T|1|5|U|3135
4V8T|1|5|G|3136

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain O

60S RIBOSOMAL PROTEIN L16-A

Chain V

60S RIBOSOMAL PROTEIN L23-A