J4_4V8Y_002
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 4V8Y|1|B2|A|623, 4V8Y|1|B2|A|1026, 4V8Y|1|B2|U|1029, 4V8Y|1|B2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8Y_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0494
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8Y|1|B2|A|622
4V8Y|1|B2|A|623
4V8Y|1|B2|G|624
*
4V8Y|1|B2|C|975
4V8Y|1|B2|G|976
4V8Y|1|B2|A|977
4V8Y|1|B2|A|978
4V8Y|1|B2|A|979
4V8Y|1|B2|G|980
*
4V8Y|1|B2|C|1021
4V8Y|1|B2|C|1022
4V8Y|1|B2|A|1023
4V8Y|1|B2|U|1024
4V8Y|1|B2|A|1025
4V8Y|1|B2|A|1026
4V8Y|1|B2|A|1027
4V8Y|1|B2|C|1028
4V8Y|1|B2|U|1029
4V8Y|1|B2|A|1030
4V8Y|1|B2|U|1031
4V8Y|1|B2|G|1032
*
4V8Y|1|B2|U|1103
4V8Y|1|B2|U|1104
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A0
- 40S RIBOSOMAL PROTEIN S26-A
- Chain AL
- 40S RIBOSOMAL PROTEIN S11-A
- Chain AN
- 40S RIBOSOMAL PROTEIN S13
- Chain AO
- 40S RIBOSOMAL PROTEIN S14-A
- Chain AW
- 40S RIBOSOMAL PROTEIN S22-A
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
- Chain Bn
- 60S RIBOSOMAL PROTEIN L41-B
Coloring options: