J4_4V8Y_003
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 4V8Y|1|B5|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8Y_003 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0644
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V8Y|1|B5|U|112
4V8Y|1|B5|C|113
*
4V8Y|1|B5|G|267
4V8Y|1|B5|A|268
4V8Y|1|B5|G|269
4V8Y|1|B5|U|270
4V8Y|1|B5|C|271
4V8Y|1|B5|G|272
*
4V8Y|1|B5|C|293
4V8Y|1|B5|U|294
4V8Y|1|B5|A|295
4V8Y|1|B5|A|296
4V8Y|1|B5|G|297
4V8Y|1|B5|U|298
4V8Y|1|B5|G|299
*
4V8Y|1|B5|U|316
4V8Y|1|B5|A|317
4V8Y|1|B5|A|318
4V8Y|1|B5|A|319
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Bh
- 60S RIBOSOMAL PROTEIN L35-B
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36-A
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